PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_225840_iyth.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 211aa    MW: 23079 Da    PI: 8.2395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_225840_iyth.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202271255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++ a+++++g
  Bv9_225840_iyth.t1 22 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDTAAREFRG 71
                        59*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-142271IPR001471AP2/ERF domain
SMARTSM003809.5E-372285IPR001471AP2/ERF domain
PROSITE profilePS5103223.8412279IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-222279IPR016177DNA-binding domain
CDDcd000181.87E-312279No hitNo description
Gene3DG3DSA:3.30.730.102.3E-312279IPR001471AP2/ERF domain
PRINTSPR003679.4E-122334IPR001471AP2/ERF domain
PRINTSPR003679.4E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAIKEKPKTS KDINNNPGME IRYRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEEAAR  60
AYDTAAREFR GCKAKTNFAF PSDNPLVATA TITAANKSNT LIGSALSSDS STVESSSHAP  120
RLQVDLTRHH MSVGAGYGVF PFIVQQPHAM GFLPHALPVF YQDHMIAMQG ALECSLRVGA  180
QSDSDSSSVV EDSQPTREIN LDLNLAPPME V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2022781471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666079.11e-159PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9LW493e-48ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A0J8DZT51e-157A0A0J8DZT5_BETVU; Uncharacterized protein
STRINGXP_010666079.11e-158(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-29erf domain protein 9