PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_149960_rkdn.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 453aa MW: 47865 Da PI: 6.4481

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_149960_rkdn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.3e-12	267	312	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Bv6_149960_rkdn.t1 267 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 312 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-17	260	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.24E-13	260	316	No hit	No description
PROSITE profile	PS50888	17.39	262	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	264	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	267	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	268	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MREMEGGGGG RGIISHPHSL EELQQSQQQQ QQNGQQPQSQ QQYRESQNDD FLEQMLSNIP 60 NCSWPPTPHD LPSPTSNPNN SNPNSNIALK PGDSPPDDPE SAAAAAAAAV AFHYPFDEAS 120 LVSKLRHQQM NEVTAKSLLL QHQQQFLLSR RTPGDSSPGM LPLPLSLGNT DGVDHSPFKS 180 QGVAEASVQA LYNGFAGSLH ANANPPNQQP FHPPPPPPQG GSLGGGGQNN GVVQAPPASA 240 STGGSSGAGA PQRQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM 300 LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADMTSEG GGVGRSGNGT QTASANDSMT 360 VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TSLTRTSLPP TRPHVNGNNH 420 LLLPSIPSNG DGENNGNKAN NTTDSTVKDP CNT

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MREMEGGGGG RGIISHPHSL EELQQSQQQQ QQNGQQPQSQ QQYRESQNDD FLEQMLSNIP  60
NCSWPPTPHD LPSPTSNPNN SNPNSNIALK PGDSPPDDPE SAAAAAAAAV AFHYPFDEAS  120
LVSKLRHQQM NEVTAKSLLL QHQQQFLLSR RTPGDSSPGM LPLPLSLGNT DGVDHSPFKS  180
QGVAEASVQA LYNGFAGSLH ANANPPNQQP FHPPPPPPQG GSLGGGGQNN GVVQAPPASA  240
STGGSSGAGA PQRQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM  300
LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADMTSEG GGVGRSGNGT QTASANDSMT  360
VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TSLTRTSLPP TRPHVNGNNH  420
LLLPSIPSNG DGENNGNKAN NTTDSTVKDP CNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	276	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682674.1	0.0	PREDICTED: transcription factor bHLH66
Swissprot	Q9ZUG9	2e-81	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0K9RXN1	0.0	A0A0K9RXN1_SPIOL; Uncharacterized protein
STRING	XP_010682674.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-42	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]