PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv6_131110_ptmy.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | TCP | ||||||||
Protein Properties | Length: 397aa MW: 43267.4 Da PI: 7.399 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109 | 7.2e-34 | 116 | 318 | 3 | 109 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ + s +++ s+g Bv6_131110_ptmy.t1 116 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALATTGASIAQQGTSIGsdlgg 206 6999***********************************************************9999988844444444444555557777 PP TCP 89 ........................................................................................... 88 Bv6_131110_ptmy.t1 207 ssrpstnwaalvgmggagtnlgiwapppphhisgfsttattttttsnsttgttttyvggvnegtnylqkigypgfdvgganlghmnygqil 297 7778888888888888888888998888888888888888888888888889999999999999999999999999999999999999998 PP TCP 89 .....kaaksaakskksqksaasaln 109 + ++ ++++q++++ +++ Bv6_131110_ptmy.t1 298 ggnhsH---HHQ-QQQQQQQHQ-HQQ 318 753220...222.222222221.111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-33 | 120 | 326 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 121 | 175 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDPKGRKQPP LQEEVPPATL LQPHHFLSLP HPTITASSTT LIPINMVDNS HTHNNNNNNN 60 HLSNNSIKPA EIKDFQIEIA DKQIQQHQQQ QQEEQDDQQQ PQQQQQQQKK QVQLGPKRSS 120 NKDRHTKVEG RGRRIRMPAL CAARIFQLTR ELGHKSDGET IQWLLQQAEP SIIAATGSGT 180 IPASALATTG ASIAQQGTSI GSDLGGSSRP STNWAALVGM GGAGTNLGIW APPPPHHISG 240 FSTTATTTTT TSNSTTGTTT TYVGGVNEGT NYLQKIGYPG FDVGGANLGH MNYGQILGGN 300 HSHHHQQQQQ QQQHQHQQHQ QHQQHQQLNQ SMPGLELGLS QDVHVGVLTP QALSQIYQQM 360 GHHHQSRGGQ IGSGLTSLHH QQDHQPSNSK DDSQESA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010679990.1 | 0.0 | PREDICTED: transcription factor TCP20 | ||||
Refseq | XP_010679991.1 | 0.0 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 6e-66 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0K9RNI3 | 1e-101 | A0A0K9RNI3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679990.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-59 | TCP family protein |