PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0314.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 310aa    MW: 35184.1 Da    PI: 4.1982
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0314.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.4e-1416106196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ffkv       + + l lp +f +   ++k  +k +++++ +g+ W++ +  rk+ g+   + + +GWk+ vk+ +Lk gDf+ F++dg+
  Bostr.7867s0314.1.p  16 FFKVY--LPDESGDDLELPISFNSF--LPKSLPKNVIVRSINGNMWKMAF--RKCCGEverFAMVNGWKRIVKDENLKGGDFLEFEFDGS 99 
                          66766..445555669999999743..56779999***************..666665666*************************9986 PP

                          SEE..EEEE CS
                   B3  88 sefelvvkv 96 
                          + f  ++ +
  Bostr.7867s0314.1.p 100 RLF--NFCI 106
                          666..5544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-199108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-1610109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2814110IPR003340B3 DNA binding domain
CDDcd100172.13E-1514107No hitNo description
SMARTSM010196.4E-1316110IPR003340B3 DNA binding domain
PfamPF023622.8E-1216107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-8205306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-11205292IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTMNKGNSAD DSLPKFFKVY LPDESGDDLE LPISFNSFLP KSLPKNVIVR SINGNMWKMA  60
FRKCCGEVER FAMVNGWKRI VKDENLKGGD FLEFEFDGSR LFNFCIYEHE TMCKRIRRSS  120
EQSEEIKVES DGEEETQASD DVLAPDEDDD DSDYNYAEDY DGDAAVEEED NDGDESDDYV  180
VDDDDVEAVN LGDDADDDER QYLDDGENPY FTLTLNPKKK SQLLIPARVI KDYGLHFPES  240
ITLVDPLVKK FGTLEKQIKI QTNGSVFVKG FGSIFRRNKV KTTDKMICEI KKMGDNNLVQ  300
TMKIHIIGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-1361131104At1g16640
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0314.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0567301e-125DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638315.11e-162B3 domain-containing protein At5g60130
SwissprotQ9LVG11e-149Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLR0GU011e-158R0GU01_9BRAS; Uncharacterized protein
STRINGBostr.7867s0314.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.21e-71B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]