PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G60130.1
Common NameMGO3.11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 300aa    MW: 34280.9 Da    PI: 4.1786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G60130.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-161821698
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 +vlp +f++     k  + t+t+++ sg+ W+++l+    +   +++v+ +GWk+ vk+ +Lk gDf+ F++dg+s+f  ++ +++
  AT5G60130.1  1 MVLPISFTRFLP--KSLPETVTVRSISGNIWKLELKKccgDDDTEKFVMVNGWKRIVKDEDLKGGDFLEFEFDGSSCF--HFCIYE 82
                 799999996654..568889***************66655555566****************************9***..666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.73E-16181No hitNo description
SMARTSM010191.4E-7184IPR003340B3 DNA binding domain
PROSITE profilePS5086314.861184IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-17184IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-14182IPR015300DNA-binding pseudobarrel domain
PfamPF023629.2E-14181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-9196287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-11196287IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVLPISFTRF LPKSLPETVT VRSISGNIWK LELKKCCGDD DTEKFVMVNG WKRIVKDEDL  60
KGGDFLEFEF DGSSCFHFCI YEHRTMCKKI RRSSDQSEEI KVESDSDEQN QASDDVLSLD  120
EDDDDSDYNC GEDNDSDDYA DEAAVEKDDN DADDEDVDNV ADDVPVEDDD YVEAFDSRDH  180
AKADDDDEDE RQYLDDRENP SFTLILNPKK KSQLLIPARV IKDYDLHFPE SITLVDPLVK  240
KFGTLEKQIK IQTNGSVFVK GFGSIIRRNK VKTTDKMIFE IKKTGDNNLV QTIKIHIISG
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible247665_at0.0
Expression AtlasAT5G60130-
AtGenExpressAT5G60130-
ATTED-IIAT5G60130-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G60130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G60130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0567300.0DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001330294.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9LVG10.0Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A1P8BAD70.0A0A1P8BAD7_ARATH; AP2/B3-like transcriptional factor family protein
STRINGAT5G60130.21e-168(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]