PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G60130.2
Common NameMGO3.11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 300aa    MW: 34263.1 Da    PI: 4.2667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G60130.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.5e-1814108198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  ffkv       + + +vlp +f++     k  + t+t+++ sg+ W+++l+    +   +++v+ +GWk+ vk+ +Lk gDf+ F++dg+s+f  ++ 
  AT5G60130.2  14 FFKVY--LPDESGDDMVLPISFTRFLP--KSLPETVTVRSISGNIWKLELKKccgDDDTEKFVMVNGWKRIVKDEDLKGGDFLEFEFDGSSCF--HFC 105
                  67777..445555669*******7664..568889***************66655555566****************************9***..666 PP

                  EE- CS
           B3  96 vfr 98 
                  +++
  AT5G60130.2 106 IYE 108
                  655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-217108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-189108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.01412110IPR003340B3 DNA binding domain
CDDcd100171.92E-1812107No hitNo description
PfamPF023621.0E-1514107IPR003340B3 DNA binding domain
SMARTSM010192.8E-1614110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-9196287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-11196287IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNKGVSLDNC VPKFFKVYLP DESGDDMVLP ISFTRFLPKS LPETVTVRSI SGNIWKLELK  60
KCCGDDDTEK FVMVNGWKRI VKDEDLKGGD FLEFEFDGSS CFHFCIYEHR TMCKKIRRSS  120
DQSEEIKVES DSDEQNQASD DVLSLDEDDD DSDYNCGEDN DSDDYADEAA VEKDDNDADD  180
EDADDDDEDE RQYLDDRENP SFTLILNPKK KSQLLIPARV IKDYDLHFPE SITLVDPLVK  240
KFGTLEKQIK IQTNGSVFVK GFGSIIRRNK VKTTDKMIFE IKKTGDNNLV QTIKIHIISG
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible247665_at0.0
Expression AtlasAT5G60130-
AtGenExpressAT5G60130-
ATTED-IIAT5G60130-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G60130.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G60130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0567300.0DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190577.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9LVG10.0Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A178UAT20.0A0A178UAT2_ARATH; Uncharacterized protein
STRINGAT5G60130.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]