PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0261.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 278aa    MW: 31817.8 Da    PI: 4.9726
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0261.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.4e-10311131299
                           HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           ++++ ++p +f+ +  g    +  +++  ++ +sW++ l  ++ ++  +++++ W eFv++n++  +D + F++d+++ f l v++f++
  Bostr.29827s0261.1.p  31 SKSMRIIPDEFVGSTPGA--FENRVVISVRWENSWQLWL--ERDKDDlFMIEEDWDEFVDDNHVGPNDNLFFRHDDTM-F-LEVQIFKN 113
                           3355699*****888555..344699999**********..8887778*************************87644.4.58998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-1514114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-1415115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-1117112No hitNo description
SMARTSM010194.6E-1519114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.51820114IPR003340B3 DNA binding domain
PfamPF023622.1E-831113IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-8170258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-6171258IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-5177272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLPKSVVDKL QENVSKPCFW KSLSPGQNWK SKSMRIIPDE FVGSTPGAFE NRVVISVRWE  60
NSWQLWLERD KDDLFMIEED WDEFVDDNHV GPNDNLFFRH DDTMFLEVQI FKNNGDEIMD  120
VPCEVEPETE PLHPNPQNSH KETTPASASE NGGTNGRGRN AVKNPEQYLL NPENPYFVQA  180
VTKRNDVLYV SRPVIHKYGL KFGPPYSTVN YLLPGEKKEE GVLKIYNGQP CFSQWSVLCR  240
KHNLNIGDYV VCEIERSCGL VTAVRVHFVN EDKTSPL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAPTransfer from AT5G25475Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0261.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289143.21e-163B3 domain-containing protein At5g25475
SwissprotQ680D91e-157Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLR0FJ181e-161R0FJ18_9BRAS; Uncharacterized protein
STRINGBostr.29827s0261.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-160B3 family protein