PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0244.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 197aa    MW: 22318.5 Da    PI: 10.4879
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0244.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-143981448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          ++++Ed+l+++++++lG++ W +Ia +++ gRt+++++ +w +yl
  Bostr.10273s0244.1.p 39 FSKDEDDLILKLHALLGNR-WPLIAGRLP-GRTDNEVRIHWETYL 81
                          89*****************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-171891IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-202886IPR009057Homeodomain-like
PROSITE profilePS5129421.3813185IPR017930Myb domain
SMARTSM007171.3E-133583IPR001005SANT/Myb domain
CDDcd001672.85E-113981No hitNo description
PfamPF002495.9E-133981IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNKIRLRALS PPSGMQHRGK RCRLRGRNYV RPAVKQSYFS KDEDDLILKL HALLGNRWPL  60
IAGRLPGRTD NEVRIHWETY LKRKLIKMGI DPTNHRLHHH TKYISRRYLN SSHKEHETKI  120
ISDQSSSVSE SCGITFLPIS STNCSEDITS TGRSRLPDLN IGLIPTVASL PARCLQDSSE  180
SSNYGSTGQE TLLLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-18198542108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0244.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3706090.0AF370609.1 Arabidopsis thaliana putative transcription factor (F23N20.2) mRNA, complete cds.
GenBankAY0482310.0AY048231.1 Arabidopsis thaliana At1g71030/F23N20_2 mRNA, complete cds.
GenBankAY0870930.0AY087093.1 Arabidopsis thaliana clone 31592 mRNA, complete sequence.
GenBankAY0916970.0AY091697.1 Arabidopsis thaliana At1g71030/F23N20_2 mRNA, complete cds.
GenBankAY5195190.0AY519519.1 Arabidopsis thaliana MYB transcription factor (At1g71030) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177259.11e-116MYB-like 2
TrEMBLQ9C9A51e-115Q9C9A5_ARATH; At1g71030/F23N20_2
STRINGBostr.10273s0244.1.p1e-143(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.11e-118MYB-like 2