PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0481.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 431aa    MW: 48132.4 Da    PI: 5.6753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0481.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.79.4e-14110131526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+f++rtG CkyG++CkF+H+
  Bostr.0568s0481.1.p 110 DCSFYMRTGSCKYGSSCKFNHP 131
                          7********************9 PP
2zf-CCCH34.14.8e-11157178526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++++rtG CkyG++C+F+H 
  Bostr.0568s0481.1.p 157 ECKYYFRTGGCKYGESCRFSHM 178
                          6********************6 PP
3zf-CCCH38.91.4e-12200224226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+f++r+G Ck+G+ CkF+H+
  Bostr.0568s0481.1.p 200 GEKECPFYMRNGSCKFGSDCKFNHP 224
                          7899********************9 PP
4zf-CCCH19.91.3e-06331356227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C ++++tG Ck+  +Ck++H++
  Bostr.0568s0481.1.p 331 DQPECTYYLKTGDCKFKYKCKYHHPK 356
                          689*********************96 PP
5zf-CCCH32.91.1e-10377401226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C +++r+G+Ck+G+ C+F H+
  Bostr.0568s0481.1.p 377 DQSMCTHYSRYGICKFGPACRFDHS 401
                          5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-6103133IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662105133IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-11109131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6111130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68152180IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5152179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-6152181IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8157178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6158180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286198226IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6198225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6200225IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10200224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4204223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112329357IPR000571Zinc finger, CCCH-type
SMARTSM003560.079329356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5333359IPR000571Zinc finger, CCCH-type
PfamPF146080.43335355No hitNo description
PROSITE profilePS5010314.906375403IPR000571Zinc finger, CCCH-type
SMARTSM003560.019375402IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6376403IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5379401IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7381401IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MSKPEEISDP NPSELDPKPP SRSSYDEVTV ADRAPSDLNH VPEELSDQFR NVGLDDSANE  60
LSVPISVSEG NEETDSRALG GDQEEEDGSE RESTIEKRMI VYPVRPDADD CSFYMRTGSC  120
KYGSSCKFNH PVRRKLQIGR EKVREREEDV ENPKLMECKY YFRTGGCKYG ESCRFSHMKE  180
QTYLASRPEL NFLGLPIRPG EKECPFYMRN GSCKFGSDCK FNHPDPMAIG GVDSPLFRGN  240
NGASVGSFSP KAPPSQVSST SWSSSRHMNG TGTAPFIPAM FPQNRGVSPQ ASEWNVYQAS  300
SAYPPVSLAE TSSFSQYQQQ MPVEEFPERP DQPECTYYLK TGDCKFKYKC KYHHPKNRLP  360
KQAPSSFNDK GLPLRPDQSM CTHYSRYGIC KFGPACRFDH SIPPTFSPSS SLTVEVPLAG  420
ANGNEDDSWH *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0481.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484051.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLR0F1G10.0R0F1G1_9BRAS; Uncharacterized protein
STRINGBostr.0568s0481.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein