PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G075200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 606aa MW: 65337.7 Da PI: 6.555 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.3e-32 | 227 | 284 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkgse+prsYY+Ct+++C+vkk +er+a d++++e++Y+g+Hnh+k Brast06G075200.1.p 227 EDGYNWRKYGQKLVKGSENPRSYYKCTHPNCEVKKLLERAA-DGQITEVVYKGRHNHPK 284 7****************************************.***************85 PP | |||||||
2 | WRKY | 107.3 | 7.5e-34 | 400 | 458 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++dpk v++tYeg+Hnhe Brast06G075200.1.p 400 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASHDPKSVITTYEGKHNHE 458 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-28 | 216 | 285 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.398 | 221 | 285 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-25 | 224 | 285 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-35 | 226 | 284 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-25 | 227 | 283 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.2E-38 | 385 | 460 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-29 | 392 | 460 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.871 | 395 | 460 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-39 | 400 | 459 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-26 | 401 | 458 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MSDSPNPGSG DLPGGVGSSP EKPYPADRRV AALAGAGARY KAMSPARLPI SREPCLTIPA 60 GFSPSALLES PVLLTNFKVE PSPTTGSLGM AAIMHKSTHS DILPSPRDKS VLSAHEDGGS 120 RDFEFKPHLN SSSQSMAPAM SDLKNPEHSM QNQSMNPSSS SNMAIEYRPP CSRESTLTVN 180 VSSAQDQLGL TESMPVDVGT SELHQMNNSD NAMQEPVSEN ATEKSTEDGY NWRKYGQKLV 240 KGSENPRSYY KCTHPNCEVK KLLERAADGQ ITEVVYKGRH NHPKPQPNRR LAGGAVPSNQ 300 GEDRNDGVAA IDDKSSNVLS ILGNPVHSTG MAEPIPGSAS DDDIDAGAGR PYPGDDATED 360 EDLESKRRKM ESAGIDAALM GKPNREPRVV VQTVSEVDIL DDGYRWRKYG QKVVKGNPNP 420 RSYYKCTSTG CPVRKHVERA SHDPKSVITT YEGKHNHEVP AARNASHEMP TPPMKNTVHP 480 INSNMPSSIG GMMRACEARN FTNQYSQASE TETISLDLGV GISPNHREAT NQIQSSIPDQ 540 MQYQMQPMAS MYGNMRLPAM AMPTVQGHAA GSVYGSREEK GNEGFTFKAT PMDHSANLCY 600 SGAGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-37 | 227 | 461 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-37 | 227 | 461 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G075200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM201384 | 0.0 | KM201384.1 Stipa purpurea WRKY17 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562812.1 | 0.0 | WRKY transcription factor SUSIBA2 isoform X1 | ||||
Swissprot | Q6VWJ6 | 0.0 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | I1GSY9 | 0.0 | I1GSY9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G23340.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6740 | 38 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-100 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast06G075200.1.p |