PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G187300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 424aa    MW: 43869.2 Da    PI: 6.5683
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G187300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.32e-3673174696
                 TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg 88 
                          r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai ++tgt++ +a ++                  ++ss+
  Brast05G187300.1.p  73 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIVAATGTGTVPAIATtvdgvlriP---------TQSSS 154
                         6999********************************************************88888444332222322.........22222 PP

                 TCP  89 ..............kaaksaak 96 
                                       ++ak    
  Brast05G187300.1.p 155 ssadpavvdgageeSSAKR--R 174
                         1223333334432211111..2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.00975129IPR017887Transcription factor TCP subgroup
PfamPF036344.3E-3075164IPR005333Transcription factor, TCP
PfamPF097434.8E-6373420IPR018611E3 UFM1-protein ligase 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEAAQGPGPG QGQEEETAAQ RMRGQVGGGD GVGSAAAGAG AMAMVPMHQG FMVPKPEPVE  60
FFGGMAMVRK PPPRNRDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS DGETIRWLLQ  120
QSEPAIVAAT GTGTVPAIAT TVDGVLRIPT QSSSSSADPA VVDGAGEESS AKRRRKLQPT  180
RAAPGVTLPT AAAPSAYYSV VADPLLQGPA GGGGAAISVA SGLAPMSGHH QGLVPVFAVP  240
SSGSPAAGVG AHMIPQATAV WMVPQPVAGG GGAVGNQPTQ FWAFQSAPQL INLAGAQGAV  300
FPAAALNVAD FHHQQQQAAS TVVQNSNSSF HQHLAVAESH EQQQRRAHHP EEEEDDDDEE  360
PQQLQEMHGA NGVLMEGSFF QSIFVSLLKE GAVLGSLRAG VQWTPAVFAH ARKEGVDAFF  420
FTG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G187300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238396.10.0transcription factor PCF2
RefseqXP_010238399.10.0transcription factor PCF2
RefseqXP_010238400.10.0transcription factor PCF2
RefseqXP_014758697.10.0transcription factor PCF2
RefseqXP_024319028.10.0transcription factor PCF2
RefseqXP_024319029.10.0transcription factor PCF2
RefseqXP_024319030.10.0transcription factor PCF2
RefseqXP_024319031.10.0transcription factor PCF2
RefseqXP_024319032.10.0transcription factor PCF2
RefseqXP_024319033.10.0transcription factor PCF2
RefseqXP_024319034.10.0transcription factor PCF2
RefseqXP_024319035.10.0transcription factor PCF2
SwissprotA2YXQ11e-136PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-136PCF2_ORYSJ; Transcription factor PCF2
TrEMBLI1IS050.0I1IS05_BRADI; Uncharacterized protein
STRINGBRADI4G35670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-41TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]