PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G153700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 36229.8 Da PI: 5.0137 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l+ +++q+G g+W++ ++ g+ R++k+c++rw +yl Brast02G153700.1.p 14 RGRWTAEEDDILAGYIAQHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.8e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eEd+l+v++++ lG++ W++Ia++++ gRt++++k++w+++l Brast02G153700.1.p 67 RGSISREEDDLIVKLHATLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 678899****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.699 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.9E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.825 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.94E-13 | 71 | 112 | No hit | No description |
Pfam | PF06640 | 2.9E-58 | 130 | 332 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDDILAGYIA QHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRDGVKRGSI SREEDDLIVK LHATLGNRWS LIASHLPGRT DNEIKNYWNS HLSRQIHTFR 120 RTYTAGSDTT ITIDISKLSA AGKRRGGRTA GQSPKSSAKK QQRPEEPNKA KDASSPATAT 180 SSASSALHSD EARSAVVDPD QNQPNNSVSG SHTSDGPCSR DETGAFFMDP VDQFGLWEAD 240 SSFNQIGHLE ESQMEPLLSS GVASENGLTG VEPEGQVQVD DLLDMDWEGF AAHLWNEPAQ 300 GDMIQAAEPQ TTTSSDPDEL DSFVSWLLSD AC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 12 | 118 | 5 | 110 | B-MYB |
1h8a_C | 4e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G153700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356334 | 1e-163 | AK356334.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1033F20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558096.1 | 0.0 | myb-related protein P | ||||
Swissprot | P27898 | 1e-97 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | I1H6A7 | 0.0 | I1H6A7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G64687.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 7e-71 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G153700.1.p |