PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G149100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 377aa    MW: 39928.6 Da    PI: 6.1474
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G149100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.9e-18250284135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Brast01G149100.1.p 250 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 284
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.4E-701337IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.104.3E-15244281IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.637244280IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-18244294IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-15246307No hitNo description
CDDcd002021.46E-14249296No hitNo description
PfamPF003201.3E-15250284IPR000679Zinc finger, GATA-type
PROSITE patternPS003440250275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEATAPEYDG YYGRDKSKAA AGDHFVVDDL LALPCDEEEE EEGDGGEAAF LAELPPAKEE  60
GGGFGNASGD SSTVTALDSC TNSFSGLADG DFSGGLCEPY DQLADLEWLS NYMGEGEEAF  120
ASEDLQKLHL ISGIPPGGFS SAGARPPAPA AQQLGMFLPE APVPAKARSK RSRAAAGNWS  180
SRLLVLPPSP ASPPSPASMA ISPAESGVSG AQAFHVKRPP SKPAKKKEAP ASAPPTPTGV  240
SAAASEGRRC LHCETDKTPQ WRTGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVTSK  300
HSNSHRKVLE LRRQREMMHH HHGQQQQQQP PQHVVGSLMH MQSPLLFDGP SAPPIVAAGD  360
DFLIHHRSAT DYRQFM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G149100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767511e-100AK376751.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3134K02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567108.10.0GATA transcription factor 12
TrEMBLI1HRH30.0I1HRH3_BRADI; GATA transcription factor
STRINGBRADI2G49620.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-48GATA transcription factor 12