PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150386.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 332aa    MW: 36904 Da    PI: 7.9987
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37e-105070525
                    --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                    +C++++rtG CkyG++C+F+H
  XP_009150386.1 50 ECKYYFRTGGCKYGETCRFSH 70
                    6******************** PP
2zf-CCCH39.41e-1293117226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+f++r+G Ck+G+ CkF+H+
  XP_009150386.1  93 GEKECPFYMRNGSCKFGSDCKFNHP 117
                     7899********************9 PP
3zf-CCCH18.82.8e-06233258227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++ +tG Ck+  +Ck++H++
  XP_009150386.1 233 DQPECSYYVKTGDCKFKYKCKYHHPK 258
                     689*********************96 PP
4zf-CCCH33.47.7e-11279303226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++r+G+Ck+G+ C+F H+
  XP_009150386.1 279 DQSMCTHYSRYGICKFGPACRFDHS 303
                     5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-44572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6994573IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-74674IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-75070IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-65173IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-691118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.28691119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-693118IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-1093117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-497116IPR000571Zinc finger, CCCH-type
SMARTSM003560.076231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577231259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5234261IPR000571Zinc finger, CCCH-type
SMARTSM003560.019277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906277305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6278305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5281303IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7283303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MQRIAPFISE QGIANTDPVA SLIILSEGSS KDKVKEKERE ENVENPRLME CKYYFRTGGC  60
KYGETCRFSH TKEQTSLPTR PELNFLGLPI RPGEKECPFY MRNGSCKFGS DCKFNHPDPT  120
AAGGVDSSLF RGNNGGSFAP KEAPQASSTS WSSSRHMNGT GTAPFIPVMY SQNRGASPQT  180
PEWSGYQAPS AYPPERNVLP PSTYSANNAL AETSSFSQLQ QQMSTEEFPE RPDQPECSYY  240
VKTGDCKFKY KCKYHHPKNR LPKQSPSSFN DKGLPLRPDQ SMCTHYSRYG ICKFGPACRF  300
DHSIPPTFSS TSSQTVETPQ LGGNGNENDG WN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150386.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X2
SwissprotQ5RJC51e-177C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLM4FC030.0M4FC03_BRARP; Uncharacterized protein
STRINGBra038619.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-172C3H family protein