PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150385.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 416aa    MW: 46514.4 Da    PI: 6.7609
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-1284106426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+f+ rtG CkyG++CkF+H+
  XP_009150385.1  84 EDCSFYIRTGNCKYGSSCKFNHP 106
                     89********************9 PP
2zf-CCCH29.99.3e-10134154525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++++rtG CkyG++C+F+H
  XP_009150385.1 134 ECKYYFRTGGCKYGETCRFSH 154
                     6******************** PP
3zf-CCCH391.4e-12177201226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+f++r+G Ck+G+ CkF+H+
  XP_009150385.1 177 GEKECPFYMRNGSCKFGSDCKFNHP 201
                     7899********************9 PP
4zf-CCCH18.53.7e-06317342227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++ +tG Ck+  +Ck++H++
  XP_009150385.1 317 DQPECSYYVKTGDCKFKYKCKYHHPK 342
                     689*********************96 PP
5zf-CCCH331e-10363387226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++r+G+Ck+G+ C+F H+
  XP_009150385.1 363 DQSMCTHYSRYGICKFGPACRFDHS 387
                     5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-678108IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-580107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.01880108IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-984106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-586105IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699129157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6130158IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7134154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6135157IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6175202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286175203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6177202IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10177201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4181200IPR000571Zinc finger, CCCH-type
SMARTSM003560.076315342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577315343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5319345IPR000571Zinc finger, CCCH-type
PfamPF146080.93321341No hitNo description
SMARTSM003560.019361388IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906361389IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6362389IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5365387IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7367387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSKPDPDPKP ASGSSREKDP VADHVTEELS DDLRNVGLSD EATEELSVPI SVAEGDGETD  60
QKEEEGRERV EKRMMVYPVR PDAEDCSFYI RTGNCKYGSS CKFNHPVRRK LQIGRDKVKE  120
KEREENVENP RLMECKYYFR TGGCKYGETC RFSHTKEQTS LPTRPELNFL GLPIRPGEKE  180
CPFYMRNGSC KFGSDCKFNH PDPTAAGGVD SSLFRGNNGG SFAPKEAPQA SSTSWSSSRH  240
MNGTGTAPFI PVMYSQNRGA SPQTPEWSGY QAPSAYPPER NVLPPSTYSA NNALAETSSF  300
SQLQQQMSTE EFPERPDQPE CSYYVKTGDC KFKYKCKYHH PKNRLPKQSP SSFNDKGLPL  360
RPDQSMCTHY SRYGICKFGP ACRFDHSIPP TFSSTSSQTV ETPQLGGNGN ENDGWN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150385.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
RefseqXP_013711114.10.0zinc finger CCCH domain-containing protein 67-like
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLM4FC030.0M4FC03_BRARP; Uncharacterized protein
STRINGBra038619.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein