PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149358.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 306aa    MW: 35281.1 Da    PI: 6.9974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.3e-1663110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd++lv +++++G  +W++ +++ g+ R +k+c++rw++yl
   XP_009149358.1  63 KGEWTAEEDQKLVAYINEHGLCDWRSLPERAGLQRGGKSCRLRWLNYL 110
                      799*******************************************97 PP
2Myb_DNA-binding574.6e-18116160147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e ++++++ lG++ W++Ia++m  +Rt++++k++w++ 
   XP_009149358.1 116 RGKFTPQEEEAIIKLHAVLGNR-WAAIAKKME-NRTDNDIKNHWNSC 160
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.99758110IPR017930Myb domain
SuperFamilySSF466891.13E-2860157IPR009057Homeodomain-like
SMARTSM007171.3E-1262112IPR001005SANT/Myb domain
PfamPF002492.6E-1463110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2264117IPR009057Homeodomain-like
CDDcd001671.32E-965110No hitNo description
PROSITE profilePS5129426.885111165IPR017930Myb domain
SMARTSM007173.5E-16115163IPR001005SANT/Myb domain
PfamPF002492.5E-16116160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-25118165IPR009057Homeodomain-like
CDDcd001671.11E-10118158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSCTHIPHYS LPFKINYLLK LKKLFIFINI LSYHEVINVA SRGLLGLRKM GRKTWFDDDG  60
MKKGEWTAEE DQKLVAYINE HGLCDWRSLP ERAGLQRGGK SCRLRWLNYL RPGIRRGKFT  120
PQEEEAIIKL HAVLGNRWAA IAKKMENRTD NDIKNHWNSC LKKRLSKNGI DPMTHEPIIN  180
NLTVTTTNEE ECGSSPTNTS LTTESHFSSS PSGSACLLNK LAAGIASRQH DLDRIKNILL  240
DRKITINDQD EEGGLRRDQK IGEEDDFLIW DDGEVRRYMD TDPMEYETTP YDSVLYESTQ  300
ILDYLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25631657108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747530.0KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149358.10.0PREDICTED: myb-related protein Zm38-like
TrEMBLA0A078GN140.0A0A078GN14_BRANA; BnaA06g12860D protein
TrEMBLA0A397YWZ90.0A0A397YWZ9_BRACM; Uncharacterized protein
TrEMBLM4EA710.0M4EA71_BRARP; Uncharacterized protein
STRINGBra025678.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-112myb domain protein 47