PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126621.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 301aa    MW: 33853 Da    PI: 4.6579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.5e-12291061896
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  18 lpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     lp  f     ++k+ +k +t+++  g+ W++ l+   +  +ry+l +GWk+ +k+  L +g ++ F+ld++ +  +++++
  XP_009126621.1  29 LPVCFN--SFLPKPLPKHVTVKSIYGKIWRMALRRcGGDAERYMLLNGWKRIAKDESLTTGNVLEFQLDDDGSLCFNFSI 106
                     555554..245678999****************553444445**************************987666556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-139108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-169108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.30712108IPR003340B3 DNA binding domain
CDDcd100171.16E-1312108No hitNo description
SMARTSM010193.2E-914108IPR003340B3 DNA binding domain
PfamPF023624.1E-1025106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-6196291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-5197291IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.41201299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKPVTPAEDC VPKFFRVYMP GISGDDLELP VCFNSFLPKP LPKHVTVKSI YGKIWRMALR  60
RCGGDAERYM LLNGWKRIAK DESLTTGNVL EFQLDDDGSL CFNFSIYDPL TMCKRLGTTT  120
SVQETENADN VLVLSDDDDD DDDDDFQDSD YSCADDNDAS AEDDDHGVAA GDDDVALDGS  180
DDDEANHDDD RRYLDDRSNA FFRVKINPKK ISQLRIPSKV INDYGLSFSE TESMNIIDPL  240
VKKFGKLTKK IKVQTNGSVF IKGYGAIYRR NGVRSTDKMI CELKKAGNKN VVHTIKFHVI  300
K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347370.0AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126621.10.0PREDICTED: B3 domain-containing protein At5g60130-like
SwissprotQ9LVG11e-87Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A078F7Z00.0A0A078F7Z0_BRANA; BnaA02g06480D protein
STRINGBo2g025080.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.13e-44B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]