PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G60142.1 | ||||||||
Common Name | F15L12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 346aa MW: 40189.7 Da PI: 4.3698 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.2 | 7.9e-15 | 15 | 105 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv +p d++ l lp +f + ++k +k +++++ g+ W+v ++ ++ s+r+v+ +GWk+ vk+ +Lk g+f+ F++dg+ +f++++ AT5G60142.1 15 FFKVYLPDDSGD--DLELPISFNSF--LPKSLPKNVIVRSIYGNIWKVAFRKfCGDSERFVMVNGWKKIVKDEDLKGGEFLEFEFDGSWCFNFCI 105 788886666554..4999*999743..56779999***************666********************************9988886555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.47E-20 | 9 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-15 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.716 | 13 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.99E-14 | 13 | 106 | No hit | No description |
SMART | SM01019 | 2.4E-13 | 15 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-12 | 15 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.22E-12 | 247 | 345 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-7 | 250 | 345 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0069 | 252 | 343 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MMNRGISVDD CLPKFFKVYL PDDSGDDLEL PISFNSFLPK SLPKNVIVRS IYGNIWKVAF 60 RKFCGDSERF VMVNGWKKIV KDEDLKGGEF LEFEFDGSWC FNFCIYGRAT CKRLRSSVQI 120 TVLDDNDDGF NDDQDYGEEV KSSENFIVLD DDDISDVQDY NEEDTSSEDI TALDDADNDD 180 INDVQDYVEE DTSSEDIIVI DDDDDDDDQD YGDDDHADVE KERWRGVKTE KKKKGSSGEH 240 DRQYLDNHMN PFFTVNQHRQ IKYNMLRIPT KVITKYGLHF PEFINLIDPL EKNFGKLKRK 300 VKGQTIKGFR SIIRRNNVKL NDKVICELEK EMDGLVREIK VHVIRG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G60142 | |||||
AtGenExpress | AT5G60142 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G60142.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G60142 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026632 | 0.0 | AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001119463.2 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9LST3 | 0.0 | Y5142_ARATH; B3 domain-containing protein At5g60142 | ||||
TrEMBL | A0A178UQX5 | 0.0 | A0A178UQX5_ARATH; Uncharacterized protein | ||||
STRING | AT5G60142.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Link Out ? help Back to Top | |
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Phytozome | AT5G60142.1 |
Entrez Gene | 6241172 |
iHOP | AT5G60142 |
wikigenes | AT5G60142 |
Publications ? help Back to Top | |||
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