PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637874.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 332aa    MW: 36466.2 Da    PI: 8.8904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-105192147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W++ E+e++++a++++G   W+ I    g ++t+ q++s+ qk+
   XP_013637874.1 51 REKWSEAEHERFLEAINLYGRA-WRQIQ---G-TKTAVQIRSHAQKF 92
                     789*****************88.***87...5.889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-134597IPR009057Homeodomain-like
PROSITE profilePS5129415.0424697IPR017930Myb domain
TIGRFAMsTIGR015576.8E-144995IPR006447Myb domain, plants
SMARTSM007173.2E-65095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-65188IPR009057Homeodomain-like
PfamPF002498.2E-85191IPR001005SANT/Myb domain
CDDcd001671.44E-65393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAAPDRSEDV SNNVENGSCN SNEGTTNHET SSDRIANAAK VRKPYTVTKQ REKWSEAEHE  60
RFLEAINLYG RAWRQIQGTK TAVQIRSHAQ KFFSKVAREA DSGSDGSVQT VVIPPPRPKR  120
KPTHPYPRKS PVPYSQSPSS AMEKGTKSPT SVLSPFDSDD QTNRCSSPNS CTSDMQSIDK  180
KNDYATSKQS CKEDDAVTGS RPTSSIMLFG KIVLVGGESH RTSSSREDSG VDHKSMTGQD  240
SRHVDTVLSL GVWDTSCTGS NAFGSVTDVS ENLEKSAEAR KRVTSLEKQE PCYRPNGFRP  300
YKRCLSEREV TSSLSLVASE EGGSRRRARV CS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637874.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637874.10.0PREDICTED: protein REVEILLE 7 isoform X2
SwissprotB3H5A81e-151RVE7_ARATH; Protein REVEILLE 7
TrEMBLA0A0D3CB690.0A0A0D3CB69_BRAOL; Uncharacterized protein
STRINGBo5g025310.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-148MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]