PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628435.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 418aa    MW: 46768.7 Da    PI: 6.0335
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-1289111426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+f+ rtG CkyG++CkF+H+
  XP_013628435.1  89 EDCSFYIRTGSCKYGSSCKFNHP 111
                     89********************9 PP
2zf-CCCH29.99.3e-10139159525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++++rtG CkyG++C+F+H
  XP_013628435.1 139 ECKYYFRTGGCKYGETCRFSH 159
                     6******************** PP
3zf-CCCH37.63.7e-12182206226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+f++r+G Ck+G+ CkF+H+
  XP_013628435.1 182 GEKECPFYMRNGSCKFGGDCKFNHP 206
                     7899********************9 PP
4zf-CCCH18.43.7e-06319344227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++ +tG Ck+  +Ck++H++
  XP_013628435.1 319 DQPECSYYVKTGDCKFKYKCKYHHPK 344
                     689*********************96 PP
5zf-CCCH32.51.5e-10366389326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C +++r+G+Ck+G+ C+F H+
  XP_013628435.1 366 QSMCTHYSRYGICKFGPACRFDHS 389
                     578********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-683113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.82185113IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-585112IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-989111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-591110IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699134162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6135162IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7139159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5140162IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601180208IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6182207IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-10182206IPR000571Zinc finger, CCCH-type
SMARTSM003560.076317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577317345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5321347IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662363391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6363391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5367389IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7369389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSKPDPDPKP PSGSSTEKDP VADHVTEELS DDLRNVGLSD EATEELSVPI NVSEGDGETD  60
QKAEDEDEEE GRERVEKRMM VYPVRPDAED CSFYIRTGSC KYGSSCKFNH PVRRKLQIGR  120
EKVKEKEREE NVENPRLMEC KYYFRTGGCK YGETCRFSHT KEHTPLPSRP ELNFLGLPIR  180
PGEKECPFYM RNGSCKFGGD CKFNHPDPTA VGGVDSPLFR GNNGGSFAPK DAPQASSTSW  240
SSPRHMNGTG TAPFIPVMYS QNRGVSPQTP EWSGYQAPSA YPPERNILPP STYSANNSLA  300
ETSSFSQLQS TEEFPERPDQ PECSYYVKTG DCKFKYKCKY HHPKNRLPKQ SPSSFNDKGL  360
PLRPEQSMCT HYSRYGICKF GPACRFDHSI PPTFSSTSSQ TVETPQLGGN GNENDGWN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628435.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A0D3BFH30.0A0A0D3BFH3_BRAOL; Uncharacterized protein
STRINGBo3g103620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein