PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627952.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 267aa    MW: 30996.8 Da    PI: 9.0303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.3e-121764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+  +   G  +W+t++   g+ R +k+c++rw +yl
   XP_013627952.1 17 KGLWSPEEDQKLKSFILSQGHACWTTVPILAGLQRNGKSCRLRWINYL 64
                     678*******************************************97 PP
2Myb_DNA-binding521.6e-1670115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+e ++ ++  lG++ W++Ia++++ gRt++++k++w++yl
   XP_013627952.1  70 RGTFSAEEEETILILHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6331264IPR017930Myb domain
SuperFamilySSF466891.47E-2614111IPR009057Homeodomain-like
SMARTSM007172.0E-71666IPR001005SANT/Myb domain
PfamPF002493.1E-101764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-191871IPR009057Homeodomain-like
CDDcd001675.42E-62064No hitNo description
PROSITE profilePS5129426.77165119IPR017930Myb domain
SMARTSM007171.0E-1469117IPR001005SANT/Myb domain
PfamPF002493.4E-1570115IPR001005SANT/Myb domain
CDDcd001673.11E-1072115No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2572117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSQGHACW TTVPILAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFSAEEEET ILILHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKGCL  120
KSQPPLKTQR SNLAESSSSP ISCGKRNPET LDHVISFQTL PEKPYSPPSQ GSNKNMMNSN  180
NMPKLFFSEW ITSSDPRVNY SSEFTDSLHI NQTQNRNEDE ELMMIKNSYS SLEDDVMFRT  240
EFQQPHHEYA NYYTSEDFFI NSDVTYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23171177106B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627952.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627952.10.0PREDICTED: transcription factor LAF1
RefseqXP_013627953.10.0PREDICTED: transcription factor LAF1
RefseqXP_013710637.10.0transcription factor LAF1-like
RefseqXP_022554665.10.0transcription factor LAF1-like
SwissprotQ9M0K43e-92LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0D3B3U80.0A0A0D3B3U8_BRAOL; Uncharacterized protein
STRINGBo3g023270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-140myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]