PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614519.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 296aa    MW: 33252.5 Da    PI: 4.7707
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-13291041894
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  18 lpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     lp  f     ++k+ +k +tl++  g+ W+++l+   + ++ry+l +GWk+ +k+  L +g ++ F+ld++ +  +++
  XP_013614519.1  29 LPVCFN--SFLPKPLPKHVTLKSIYGKIWKMTLRRcGGDPERYMLVNGWKRIAKDESLTTGNVLEFQLDDDGSLCFNF 104
                     555554..245678999****************554566666*************************99876654455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-1610107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.7312108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1312107IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-1014108IPR003340B3 DNA binding domain
CDDcd100174.28E-1314107No hitNo description
PfamPF023625.4E-1125104IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-6191286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-5192286IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.57196294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKLVTPENDC VTKFFRVYMP GISGDDLELP VCFNSFLPKP LPKHVTLKSI YGKIWKMTLR  60
RCGGDPERYM LVNGWKRIAK DESLTTGNVL EFQLDDDGSL CFNFSIYEPL TMCKRLGTTT  120
SVQETENADD VLVLSDDDDD EDSDYSCADD TDASAEDDDH GVAAGDEDVA LDGSDDDAEA  180
NHDDDRRYLD DRSNAFFRVK INPKKISQLR IPSKVINDYG LSFSETESIV IIDPLVKKFG  240
KLSKKMKVQT NGSVFIKGYG AVYRRNGVRS TDKMICELKK AGNNNVVHTI KFHVIK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347371e-165AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614519.10.0PREDICTED: B3 domain-containing protein At5g60130-like
SwissprotQ9LVG17e-87Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A0D3AKT20.0A0A0D3AKT2_BRAOL; Uncharacterized protein
STRINGBo2g025080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.28e-85B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]