PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013614123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 32158.7 Da PI: 4.3894 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.7e-09 | 15 | 38 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++++k++w+++l XP_013614123.1 15 WSLIAGHLP-GRTDNEIKNYWNSHL 38 *********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13 | 1 | 42 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.7E-7 | 12 | 38 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.45E-7 | 13 | 42 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-6 | 15 | 38 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 15 | 39 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGLSGVKTCD SRSMWSLIAG HLPGRTDNEI KNYWNSHLRR KLHNFIIRKP SISHDAPAVI 60 MNVPPASPRP PSKRRPGRTS RSAMKPKTRK TKRTSAPPEP EADVAVKEVA GEEAIMMELN 120 GAEAELGPCD YYGAYHEGGD CCNNNNNLMG TNGDNLVLSF DDNIMDLLLD EADACNVLTS 180 CGGDAELSHL GDSEVARGLS ETSINQGNLD CLQPCPSVQS LINYELPATD ASMDECIDWH 240 EGNRNSLCGE KEGSDSIVSW LLDGDDDATV GKTNCENFGE PLDHDEENAL VAWLVS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In seedlings, predominantly expressed in roots. Expressed predominantly in the root, in the vascular tissue of the hypocotyl-root transition zone and, at low levels, at the region of apical meristem and the apex of cotyledons. {ECO:0000269|PubMed:17419845}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems and flower buds (PubMed:9839469). Expressed in seedlings, roots, cotyledons and apical meristems (PubMed:17419845). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013614123.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013614123.1 | 0.0 | PREDICTED: transcription factor MYB12-like | ||||
Swissprot | O22264 | 1e-105 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | A0A0D2ZRU9 | 0.0 | A0A0D2ZRU9_BRAOL; Uncharacterized protein | ||||
STRING | Bo00877s020.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-88 | myb domain protein 12 |