PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30340 Da PI: 6.8512 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +lv ++ +G g+W+ +++ g+ R++k+c++rw++yl XP_013603474.1 14 RGEWTEEEDRKLVAYIDVYGIGDWRFLPHKAGLQRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T+ E++ ++ + lG++ W+tIa+ m+ gR+++++k++w++ XP_013603474.1 67 KGKFTPHEEQVIISFHSILGNR-WATIAQQMP-GRSDNDIKNHWNSC 111 79********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.208 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.68E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.61E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.753 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-9 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGRATWFEAD GTKRGEWTEE EDRKLVAYID VYGIGDWRFL PHKAGLQRCG KSCRLRWLNY 60 LRPGVKKGKF TPHEEQVIIS FHSILGNRWA TIAQQMPGRS DNDIKNHWNS CLKKRLERNG 120 IDPMTHQPII NLDVKTQSFN TDCGSSSCST ASPSSSSFSS GSSRLLNKIA TGISSRQHSV 180 DRIKNILSDP TITSINGQEE GLELLKIDHG KMLASDDQED DFLMWDEEKT RHFMEEIGVM 240 DFHTNGVYNP SSSAQYGVYE TGLLGGHLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603474.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603474.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
TrEMBL | A0A0D3DQ89 | 0.0 | A0A0D3DQ89_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g068030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 2e-88 | myb domain protein 47 |