PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601795.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 168aa    MW: 19062.2 Da    PI: 4.5616
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-092252247
                     T-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                     + W++Ia++m  +Rt++++k++w++ 
   XP_013601795.1  2 R-WAAIAKEMD-NRTDNDIKNHWNSC 25
                     4.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.145130IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-11244IPR009057Homeodomain-like
PfamPF002495.0E-7225IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-8243IPR009057Homeodomain-like
CDDcd001676.30E-6223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRWAAIAKEM DNRTDNDIKN HWNSCLKKRL SRKGIDPMTH EPIINNLTVT ITNEECGSSS  60
ITTFSPTSSP SGSACLLNKL ATGISSRHHD LDRIKSILLE PRIASSDQDE KEEVKRDHTI  120
GGGEEGDDFL IWDDEEVRRF MESDEMEYGT TPYVSLFYES THVLDDLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747531e-56KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601795.11e-122PREDICTED: transcription factor MYB28-like
TrEMBLA0A3N6TMH11e-119A0A3N6TMH1_BRACR; Uncharacterized protein
STRINGBra031041.1-P1e-117(Brassica rapa)
STRINGBo8g104210.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.17e-55myb domain protein 47