PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00143527001 | ||||||||
Common Name | GSBRNA2T00143527001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 37881.6 Da PI: 6.1762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.2 | 1.1e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv++v+++G +W++ ++ g++R++k+c++rw +yl GSBRNA2T00143527001 14 KGPWTPEEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ ++++++ lG++ W+tIa++++ gRt++++k++w+++l GSBRNA2T00143527001 67 RGKFSPDEEQTILNLHAVLGNK-WSTIANHLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.953 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.47E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.54E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.947 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.21E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGRSPSSDDS GLKKGPWTPE EDEKLVNYVQ KHGHSSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPDEEQTILN LHAVLGNKWS TIANHLPGRT DNEIKNFWNT HLKKKLIQMG 120 IDPMTHLPRT DIFSSLSQLM SLSSNLRGFV DMQQQFPNGQ DQTILKLQTE MAKLQLFQYL 180 LQPPTMSNNI SNPNDFDILS LLNSIASFKE ITSNNLDLGS DLQDFNSLPS LKTLNSNIGP 240 SSVLPQIPED NHFKFCNERE NLPVSPIWLS DPTNSNQHML PSLDPSSAVS DDMIRNQYVI 300 EHVNSNLTSS SQESGASASA AWPDHLLDDS IFSDMIP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00143527001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975660 | 0.0 | KM975660.1 Brassica napus MYB transcription factor 92.1 (MYB92.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125311.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_009125312.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_009125313.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_009125314.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_009125316.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_013712379.1 | 0.0 | transcription factor MYB41-like | ||||
Refseq | XP_018511834.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_018511835.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9SBF3 | 0.0 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A398A983 | 0.0 | A0A398A983_BRACM; Uncharacterized protein | ||||
STRING | Bra028593.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 1e-179 | myb domain protein 92 |
Publications ? help Back to Top | |||
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