PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129746001
Common NameGSBRNA2T00129746001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 340aa    MW: 38274.9 Da    PI: 6.6793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129746001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.7e-201461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+lv++v+++G  +W++ +++ g++R++k+c++rw +yl
  GSBRNA2T00129746001 14 KGPWTPEEDEKLVNYVQKHGHSSWTALPKRAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding53.36.4e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rgr+++eE++ ++++++  G++ W+tIa+ ++ gRt++++k++w+++l
  GSBRNA2T00129746001  67 RGRFSPEEEQTILNLHAVVGNK-WSTIANNLP-GRTDNEIKNFWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.945961IPR017930Myb domain
SuperFamilySSF466891.17E-3111108IPR009057Homeodomain-like
SMARTSM007174.2E-161363IPR001005SANT/Myb domain
PfamPF002492.0E-181461IPR001005SANT/Myb domain
CDDcd001674.48E-131661No hitNo description
PROSITE profilePS5129426.30762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2765117IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002494.2E-1567112IPR001005SANT/Myb domain
CDDcd001679.23E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MRRSPCSDDS GLKKGPWTPE EDEKLVNYVQ KHGHSSWTAL PKRAGLNRCG KSCRLRWTNY  60
LRPDIKRGRF SPEEEQTILN LHAVVGNKWS TIANNLPGRT DNEIKNFWNT HLKKKLIQMG  120
VDPMTHRPRP DIFSSLSQLV SMSSNLRGFV DMQLQFQTDQ EQTILKLQTE MAKLKLLHDL  180
LQPPSMNNNT NPNDFDTRSL LHSIASLKET YTTSNNPDLG PYLQDFSSIP SLETLNTNMV  240
PSSISPRDLE DSHFKFFSQR DNLPVSPVWL SDPSSSNQSL LPSLDHSSVV SGDLIRNQYI  300
IEDVNSNLMT SSSGQESGAS ASPVWPDHLL DDSIFSNIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129746001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553420.0AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681915.20.0transcription factor MYB41-like
SwissprotQ9SBF30.0MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A3P5ZSR80.0A0A3P5ZSR8_BRACM; Uncharacterized protein
STRINGBra006055.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-167myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]