PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102438001
Common NameGSBRNA2T00102438001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 197aa    MW: 21976.8 Da    PI: 9.7764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102438001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-143679348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +++++Ed+l+++++++lG++ W++Ia +++ gRt+ +++ +w +yl
  GSBRNA2T00102438001 36 NFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDDEVRIHWESYL 79
                         89******************.*********.***********9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.61E-152189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-192683IPR009057Homeodomain-like
PROSITE profilePS5129422.6322983IPR017930Myb domain
SMARTSM007173.1E-133381IPR001005SANT/Myb domain
CDDcd001672.71E-113679No hitNo description
PfamPF002491.9E-133679IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNKISHGALS RPSGMLHRAK RYRGRKYAKP ELKESNFSKD EDDLILKLHA LLGNRWSLIA  60
GRLPGRTDDE VRIHWESYLE KKLMKMGIDP TNHRIYHHTN YTSRRFINAS YKKHETDIIS  120
DQSSSVSESC DMKLLPVSST NCSEANASSG NSRLPDLNIG LVPIKTVTSL PVGSLQEPSG  180
SSNHGSTSQE TLLLFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-13148339108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.141210.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102438001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3791030.0JN379103.1 Brassica rapa subsp. oleifera myb-like transcription factor 2 (MYBL2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105772.11e-144PREDICTED: myb-related protein 308
TrEMBLI6TGL91e-142I6TGL9_BRARO; Myb-like transcription factor 2
TrEMBLM4DI371e-142M4DI37_BRARP; Uncharacterized protein
STRINGBra016164.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.12e-83MYB-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]