PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076138001
Common NameGSBRNA2T00076138001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 323aa    MW: 36689 Da    PI: 6.8669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076138001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.8e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+l++ ++++G g+W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00076138001 14 KGPWTPEEDEKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding51.91.8e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++ +eE++ +++++ +lG++ W++Ia +++ gRt++++k++w+++
  GSBRNA2T00076138001  67 RGNFAAEEEQTIINLHSLLGNK-WSSIAGHLP-GRTDNEIKNYWNTH 111
                          89999*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-27563IPR009057Homeodomain-like
PROSITE profilePS5129418.892961IPR017930Myb domain
SuperFamilySSF466896.24E-3211108IPR009057Homeodomain-like
SMARTSM007175.6E-161363IPR001005SANT/Myb domain
PfamPF002491.6E-171461IPR001005SANT/Myb domain
CDDcd001672.43E-121661No hitNo description
PROSITE profilePS5129426.10962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2664117IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002499.5E-1567111IPR001005SANT/Myb domain
CDDcd001674.69E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDEKLINHIR KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF AAEEEQTIIN LHSLLGNKWS SIAGHLPGRT DNEIKNYWNT HIRKKLIQMR  120
IDPVTHRPRT DHLNVLAALP QLLAAASFNN LLTLNQSIQP DATSVAKAQW LHNMMQVLNS  180
NNTSSSVDIH HTNYNIFGQS SFLENRPNIS ENLYDPTQSI SRIDHQPLDS FSSPLGVFSH  240
QDNEDMIPPL ISASSDGSKQ TQMMIKNKEI LKHNEHTSNP SSTLTFTQDH QSWCDIIDDE  300
ASDSYWKDLI EQTCSEPWPF HE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076138001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732330.10.0transcription factor MYB41-like
RefseqXP_022562188.10.0transcription factor MYB41-like
SwissprotQ9S9Z23e-90MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A078HZ440.0A0A078HZ44_BRANA; BnaA05g32240D protein
STRINGBra032028.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.10.0myb domain protein 107
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]