PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00073126001 | ||||||||
Common Name | GSBRNA2T00073126001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 417aa MW: 46407.2 Da PI: 6.5888 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.8e-12 | 84 | 106 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+ rtG CkyG++CkF+H+ GSBRNA2T00073126001 84 EDCSFYIRTGNCKYGSSCKFNHP 106 89********************9 PP | |||||||
2 | zf-CCCH | 29.9 | 9.3e-10 | 134 | 154 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++rtG CkyG++C+F+H GSBRNA2T00073126001 134 ECKYYFRTGGCKYGETCRFSH 154 6******************** PP | |||||||
3 | zf-CCCH | 39 | 1.4e-12 | 177 | 201 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++r+G Ck+G+ CkF+H+ GSBRNA2T00073126001 177 GEKECPFYMRNGSCKFGSDCKFNHP 201 7899********************9 PP | |||||||
4 | zf-CCCH | 18.5 | 3.7e-06 | 317 | 342 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG Ck+ +Ck++H++ GSBRNA2T00073126001 317 DQPECSYYVKTGDCKFKYKCKYHHPK 342 689*********************96 PP | |||||||
5 | zf-CCCH | 33 | 1e-10 | 363 | 387 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++r+G+Ck+G+ C+F H+ GSBRNA2T00073126001 363 DQSMCTHYSRYGICKFGPACRFDHS 387 5678********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.22E-6 | 78 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 80 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 80 | 108 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-9 | 84 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 86 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.699 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 130 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-7 | 134 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-6 | 135 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-6 | 175 | 202 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.286 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 177 | 202 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-10 | 177 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 181 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.076 | 315 | 342 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.577 | 315 | 343 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-5 | 319 | 345 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.93 | 321 | 341 | No hit | No description |
SMART | SM00356 | 0.019 | 361 | 388 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.906 | 361 | 389 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 362 | 389 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-5 | 365 | 387 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-7 | 367 | 387 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MSKPDPDPKP ASGSSTEKDP VADHVTEELS DDLRNVGLSD EATEELSVPI SVAEGDGETD 60 QKEEEGRERV EKRTMVYPVR PDAEDCSFYI RTGNCKYGSS CKFNHPVRRK LQIGRDKVKE 120 KEREENVENP RLMECKYYFR TGGCKYGETC RFSHTKEQTS LPSRPELNFL GLPIRPGEKE 180 CPFYMRNGSC KFGSDCKFNH PDPTAAGGVD SSLFRGNNGG SFAPKEAPQA SSTSWSSSRH 240 MNGTGTAPFI PVMYSQNRGA SSQTPEWSGY QAPSAYPPER NVVPPSTYSA NNSLAETSSF 300 SQLQQQMSTE EFPERPDQPE CSYYVKTGDC KFKYKCKYHH PKNRLPKQSP SSFNDKGLPL 360 RPDQSMCTHY SRYGICKFGP ACRFDHSIPP TFSSTSSQTV ETPQLGGNGN ENDGWN* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00582 | DAP | Transfer from AT5G63260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00073126001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150385.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1 | ||||
Refseq | XP_013711114.1 | 0.0 | zinc finger CCCH domain-containing protein 67-like | ||||
Swissprot | Q5RJC5 | 0.0 | C3H67_ARATH; Zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | A0A078HUZ8 | 0.0 | A0A078HUZ8_BRANA; BnaA06g22640D protein | ||||
STRING | Bra038619.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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