PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00064127001 | ||||||||
Common Name | GSBRNA2T00064127001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 202aa MW: 23071.2 Da PI: 10.2397 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l +++ +G g W+++a+ g++Rt+k+c++rw++yl GSBRNA2T00064127001 25 KGPWTMEEDLILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 72 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++++lG++ W++Ia++++ gRt++++k++w++ GSBRNA2T00064127001 78 RGNITAEEHLLIIQLHAKLGNR-WSKIAKYLP-GRTDNEIKNFWRT 121 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.901 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-29 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-12 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-8 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 25.179 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-17 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-24 | 80 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-12 | 82 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDTKKTGIKK ERIPSQKEEE GTVRKGPWTM EEDLILFNYI LNHGEGLWNS VAKASGLKRT 60 GKSCRLRWLN YLRPDVRRGN ITAEEHLLII QLHAKLGNRW SKIAKYLPGR TDNEIKNFWR 120 TKIQRHVKMS SSKNTNNIRH CLGNSQSSVI TATDQGSSSK GLISPATTTT SFHVMEQSND 180 SYWNVEDIWP LQLLNDDHQV I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 25 | 127 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed specifically in flowers. {ECO:0000269|PubMed:19325888}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00064127001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118091 | 1e-153 | AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03. | |||
GenBank | BT005574 | 1e-153 | BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147443.1 | 1e-145 | PREDICTED: transcription factor MYB57-like | ||||
Refseq | XP_013730602.1 | 1e-145 | transcription factor MYB57-like | ||||
Swissprot | Q9SSA1 | 1e-106 | MYB57_ARATH; Transcription factor MYB57 | ||||
TrEMBL | A0A078HI64 | 1e-147 | A0A078HI64_BRANA; BnaA05g33770D protein | ||||
STRING | Bra039108.1-P | 1e-145 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01530.1 | 1e-109 | myb domain protein 57 |
Publications ? help Back to Top | |||
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