PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045613001
Common NameGSBRNA2T00045613001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 204aa    MW: 23234.2 Da    PI: 9.5038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045613001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.5e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W +eEd +l  ++  +G g+W+ I+r+ g++R +k+c++rw +yl
  GSBRNA2T00045613001 14 RGLWKPEEDMILRSYIDTHGEGNWADISRRSGLKRGGKSCRLRWKNYL 61
                         788*****************************99************97 PP
2Myb_DNA-binding51.62.1e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg +T++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  GSBRNA2T00045613001  67 RGGMTPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                          6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.409961IPR017930Myb domain
SuperFamilySSF466891.06E-2812108IPR009057Homeodomain-like
SMARTSM007174.4E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-221568IPR009057Homeodomain-like
CDDcd001672.76E-91761No hitNo description
PROSITE profilePS5129425.02762116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002498.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2369115IPR009057Homeodomain-like
CDDcd001674.47E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEKREEERKT HVKRGLWKPE EDMILRSYID THGEGNWADI SRRSGLKRGG KSCRLRWKNY  60
LRPNIKRGGM TPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSSSRK  120
QNATESVEAS PWVDKPVMST EVRGSHGGGG GGGEGEEDTT TTWMEETNFF ARIESPLPLT  180
AHHNPDTLLF DPSFAFTDCF PLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045613001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711636.11e-150transcription factor MYB82-like
SwissprotQ9LTF71e-109MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A078JF761e-149A0A078JF76_BRANA; BnaC02g44890D protein
STRINGBra022602.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-96myb domain protein 82
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]