PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35670.1.p
Common NameBRADI_4g35670, LOC100832369
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 368aa    MW: 37841.1 Da    PI: 5.9131
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.61.6e-3671170694
               TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......... 88 
                        r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai ++tgt++ +a ++ +++ +    ++ss+          
  Bradi4g35670.1.p  71 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIVAATGTGTVPAIAT-TVDGVLRIPTQSSSssadpavvdg 162
                       6999********************************************************88888444.222222222222221223333334 PP

               TCP  89 ....kaaksa 94 
                           +  +++
  Bradi4g35670.1.p 163 ageeS--SAK 170
                       43211..222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3073161IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00973127IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEAAQGPGQG QEEETAAQRM RGQVGGADGV GSAAAGAGAM AMVPMHQGFM VPKPEPVEFF  60
GGMAMVRKPP PRNRDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIRWLLQQS  120
EPAIVAATGT GTVPAIATTV DGVLRIPTQS SSSSADPAVV DGAGEESSAK RRRKLQPTRA  180
APGVTLPTVA APSAYYSVVA DPLLQGPAGG GGAAISVASG LAPMSGHHQG LVPVFAVPSS  240
GSPAAAVGGH MIPQATAVWM VPQPVAGGGA AVGNQPTQFW AFQSAPQLIN LAGAQGAVFP  300
AAALNVADFH QQQQAASTVV QNSNSSFHQH LAGAESHEQQ QRRAHHPEEE DDDDDEEPVS  360
DSSPEEE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238396.10.0transcription factor PCF2
RefseqXP_010238399.10.0transcription factor PCF2
RefseqXP_010238400.10.0transcription factor PCF2
RefseqXP_014758697.10.0transcription factor PCF2
RefseqXP_024319028.10.0transcription factor PCF2
RefseqXP_024319029.10.0transcription factor PCF2
RefseqXP_024319030.10.0transcription factor PCF2
RefseqXP_024319031.10.0transcription factor PCF2
RefseqXP_024319032.10.0transcription factor PCF2
RefseqXP_024319033.10.0transcription factor PCF2
RefseqXP_024319034.10.0transcription factor PCF2
RefseqXP_024319035.10.0transcription factor PCF2
SwissprotA2YXQ11e-143PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-143PCF2_ORYSJ; Transcription factor PCF2
TrEMBLI1IS050.0I1IS05_BRADI; Uncharacterized protein
STRINGBRADI4G35670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-41TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]