PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g50050.1.p | ||||||||
Common Name | BRADI_3g50050, LOC100831851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | YABBY | ||||||||
Protein Properties | Length: 258aa MW: 27319.9 Da PI: 8.0234 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 214.6 | 3.2e-66 | 21 | 215 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee.................lleelk 76 s +eq+Cyv+Cn C+tilav vP +sl+k+v+vrCGhC++llsvnl+ a + +l++sl + l++ + Bradi3g50050.1.p 21 SPTEQLCYVHCNCCDTILAVGVPCSSLYKTVAVRCGHCANLLSVNLRGLLlppaAPPANQPQLSHSLLSPtsphgllddvafqttslLMD--Q 111 578********************************************998554222334556777776668999*888888777653222..2 PP YABBY 77 veeenlksnvekeesastsvssekl..........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 +++nl+s + +s+s+ s++ + ++++++ ++ +p +++PPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaakn Bradi3g50050.1.p 112 ASGNNLSSGGFTGRSNSSCASNMPVmpmpaatkpaQQETEQTTKSAPSTNKPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKN 204 2333333332222222222222221355899888444444555556669******************************************** PP YABBY 160 WahfPkihfgl 170 WahfP+ihfgl Bradi3g50050.1.p 205 WAHFPHIHFGL 215 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-69 | 22 | 215 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-8 | 155 | 208 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 162 | 207 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSSSSSSSSA VFNLQDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLYKT VAVRCGHCAN 60 LLSVNLRGLL LPPAAPPANQ PQLSHSLLSP TSPHGLLDDV AFQTTSLLMD QASGNNLSSG 120 GFTGRSNSSC ASNMPVMPMP AATKPAQQET EQTTKSAPST NKPPEKRQRV PSAYNRFIKD 180 EIQRIKAGNP DITHREAFSA AAKNWAHFPH IHFGLIPDQG FKRSFVKAQD GAEDMLLKDS 240 LYAAAAAAAA NMGVTPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g50050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569970.1 | 0.0 | protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 1e-116 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-116 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | I1IC11 | 0.0 | I1IC11_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G50050.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 | Representative plant | OGRP4685 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-49 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g50050.1.p |
Entrez Gene | 100831851 |
Publications ? help Back to Top | |||
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