PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g23340.1.p
Common NameBRADI_1g23340, LOC100837150
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 606aa    MW: 65207.4 Da    PI: 6.6607
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g23340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.6e-32227284260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +er+a d++++e++Y+g+Hnh+k
  Bradi1g23340.1.p 227 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERAA-DGQITEVVYKGRHNHPK 284
                       8****************************************.***************85 PP
2WRKY107.37.5e-34400458159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++dpk v++tYeg+Hnhe
  Bradi1g23340.1.p 400 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASHDPKSVITTYEGKHNHE 458
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-28219285IPR003657WRKY domain
PROSITE profilePS5081124.122221285IPR003657WRKY domain
SuperFamilySSF1182901.18E-24224285IPR003657WRKY domain
SMARTSM007744.4E-35226284IPR003657WRKY domain
PfamPF031061.2E-24227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-38385460IPR003657WRKY domain
SuperFamilySSF1182901.19E-29392460IPR003657WRKY domain
PROSITE profilePS5081138.871395460IPR003657WRKY domain
SMARTSM007741.4E-39400459IPR003657WRKY domain
PfamPF031062.1E-26401458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MSDSPNPGSG DLPGGAGSSP EKPCPADRRV AALTGAGARY KAMSPARLPI SREPCLTIPA  60
GFSPSALLES PVLLTNFKVE PSPTTGSLGM AAIMHKSAHP DILPSPRDKS VLSAHEDGGS  120
RDFEFKPHLN SSSQSMAPAM SDLKNHEHSM QNQSTNPSSS SNMVIEYRPP CSRESTLAVN  180
VSSAQDQLGL TDSMPVDVGT SELHQMNNSE NAMQEPQSEH ATEKSAEDGY NWRKYGQKHV  240
KGSENPRSYY KCTHPNCEVK KLLERAADGQ ITEVVYKGRH NHPKPQPNRR LAGGAVPSNQ  300
GEDRNDGLAA IDDKSSNVLS ILGNPVHSTG MAEPVPGSAS DDDIDAGAGR PYPGDDATED  360
DDLESKRRKM ESAGIDAALM GKPNREPRVV VQTVSEVDIL DDGYRWRKYG QKVVKGNPNP  420
RSYYKCTSTG CPVRKHVERA SHDPKSVITT YEGKHNHEVP AARNASHEMP APPMKNAVHP  480
INSNMPSSIG GMMRACEARN FTNQYSQASE TETISLDLGV GISPNHREAT NQIQSSVPDQ  540
MQYQMQPMAS VYGNMRLPAM AMPTVQGHAA GSIYGSREEK GNEGFTFKAT PMDHSANLCY  600
SGAGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37227461878Probable WRKY transcription factor 4
2lex_A7e-37227461878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g23340.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2013840.0KM201384.1 Stipa purpurea WRKY17 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562812.10.0WRKY transcription factor SUSIBA2 isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLI1GSY90.0I1GSY9_BRADI; Uncharacterized protein
STRINGBRADI1G23340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-103WRKY family protein