PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30437
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 510aa    MW: 54492.8 Da    PI: 4.5823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30437genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11314359555
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               h+++Er RR++i +++ +L++l+P++      K +K+++L + ++Y+k Lq
  EMT30437 314 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 359
               99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-16307369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-12307363No hitNo description
PROSITE profilePS5088816.901309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16311368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDYSNGSFFP SWPGNSASEN YSFVDGSVES YAEEGGMPPT GYFRARSNQN LTFDEHEQNP  60
AMLANGCLPY NTQTDLLSGE ILSEDKHSNS LMELPQLQNN GSLQSNLIPP GTLQCTSTPG  120
TFDLQLDTPG LLELPHALSS SIESNASTLC STFQNVPSYM EPVSLEAFSF QGIQNAAMFN  180
NTSHSNGNLS VFDEATMASL HDSKEFLSGS ISSFGTAEQS QLAGSGLKAE QQEQNAMCNI  240
PLPFASGSQM AVSEAQGAMI PSKISSTMHN NKSEYPVPIS HSADAQNKAN SANGNSASAK  300
PRARARRGQA TDPHSIAERL RREKISERMK NLQDLVPNSN KADKSSMLDE IIDYVKFLQL  360
QVKVLSMSRL GAPGAVLPLL AESQTEGRSN SPLSSPTASQ GLLDAAGPED SLVFEQEVIK  420
LMETSITNAM QYLQNKGLCL MPIALASAIS NQKGTSAAAI PPERLQLYLI SSFLLSEICA  480
LALGHVQIST LLGTDAGAGA HVPTSAWIQQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9793920.0DQ979392.1 Triticum aestivum cultivar PH85-16 PTF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198859.10.0uncharacterized protein LOC109784671
TrEMBLM8CS590.0M8CS59_AEGTA; Transcription factor bHLH82
STRINGEMT304370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-46LJRHL1-like 1