PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481281
Common NameARALYDRAFT_481281
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 354aa    MW: 36821 Da    PI: 6.9175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481281genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11149194555
             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
             h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  481281 149 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 194
             99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17142203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-13142198No hitNo description
PROSITE profilePS5088817.409144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-9149194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSSPWP SVVDDAHPPP SDGFHGHDVD  60
SRNQQIMMMP LNDGSSVHAL YNSFSASGSL PNFHIPQGSG GGLMNQQGQT QTQTQPQASA  120
STATGGTVAV PPQSRTKVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA  180
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAS VSSQLSEAGG SHGNASSAMA GGSQTAGNSN  240
DSITMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGPVADV  300
GGPSSPNLSG MTIQSTNTTT MGNGNGKLNG NGNGVTKGSS SIAVKEAVSV SKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap481281
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763700.0AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265120.0BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880568.10.0transcription factor bHLH66
SwissprotQ9ZUG90.0BH066_ARATH; Transcription factor bHLH66
TrEMBLD7LHI20.0D7LHI2_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.4__341__AT2G24260.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-180LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]