PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MU34N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 307aa    MW: 34462.3 Da    PI: 8.4948
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MU34NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19237271135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+ +Tp+WR+gp g+ktLCnaCG+++++ +l
  Araip.MU34N 237 CQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRL 271
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-15231281IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.176231267IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15233294No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14235269IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-15236284No hitNo description
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
PfamPF003205.2E-17237271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDKXXXXXXX XXXXXASPSL VLSPSISQSL IPTCSGVSFL SSQFQLLQQL SVTQKVAKLK  60
AFELGMEVLG TVDDLLDFSS DVGEDNDAVV DRRRKGFPCN PECKQPSFNP LAMDDPNYSF  120
SEFAEEELEW LSNKDAFPAV ETFVDIPSIQ PNMSKHQGTA SVLEYRRSIP NNNCTNNITL  180
LNGFDHLKVP VRARSKCRSR PRLAIADVSS HQSWWRLSSR EISGVEVIKI PTIGRKCQHC  240
GSEETPQWRS GPLGPKTLCN ACGVRFKSGR LVPEYRPATS PTFRHELHSN SHRKIIEMRK  300
QKQMGMV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MU34N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025633062.10.0GATA transcription factor 1
TrEMBLA0A445AHJ20.0A0A445AHJ2_ARAHY; Uncharacterized protein
STRINGGLYMA10G25480.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-41GATA transcription factor 9