PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.H0SLK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 421aa MW: 48242.1 Da PI: 4.8146 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.5e-16 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd++l d++++ G g+W+ ++ g+ R++k+c++rw +yl Araip.H0SLK 36 KGRWTAEEDKILTDYIQENGEGSWRNLPKNAGLLRCGKSCRLRWINYL 83 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 89 | 134 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+e++v++++ lG++ W+ Ia +++ gRt++++k++w+++l Araip.H0SLK 89 RGNITPQEEEIIVKLHAVLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 134 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 27 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.581 | 31 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.9E-28 | 33 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-12 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 36 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.24E-9 | 38 | 83 | No hit | No description |
PROSITE profile | PS51294 | 25.369 | 84 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 87 | 138 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-16 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 89 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-10 | 93 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MLALLLLYNL GPLIVSFLVS SIMGRTPCCE KVGLKKGRWT AEEDKILTDY IQENGEGSWR 60 NLPKNAGLLR CGKSCRLRWI NYLRADVKRG NITPQEEEII VKLHAVLGNR WSVIAGHLPG 120 RTDNEIKNYW NSHLRRKIYC FMRSLNESLP PIDMAALNEA ASKRRAAPRR SSTIQENNNN 180 NNKTSLPKRE AITTSSQNCC NILGDHHDHD DDDGKGISMM DAYFQMELGN NNNPASSFMN 240 NNNNNGDFDE GLLGAYEWPD EEIMRLTQMF ENGVLVNNNN NNNNIALKEE PNGNYYYDDD 300 ECGQMMDMDM DLDMDAIGAT RTTSEEEEEE SKNHKNNNNI AASISEHNYW YNNNNNDNSC 360 SSSSVGDYHQ WHDWDLAHQS NNNNHHHQWD LSTEDDQMLM MNSLWGTTTN EVNNTAFHHY 420 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 34 | 138 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.H0SLK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB573735 | 4e-74 | AB573735.1 Lupinus albus LaMYB12 mRNA for R2R3-MYB transcription factor, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016196503.2 | 0.0 | myb-related protein 330-like | ||||
Swissprot | Q9FJ07 | 5e-73 | MY111_ARATH; Transcription factor MYB111 | ||||
TrEMBL | A0A444ZF95 | 0.0 | A0A444ZF95_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G04370.1 | 1e-127 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-71 | myb domain protein 12 |