PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6157_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 468aa MW: 50396.7 Da PI: 5.1346 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++v+++G g+W+++ r g+ R++k+c++rw ++l Neem_6157_f_2 32 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 79 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 24.9 | 4.8e-08 | 85 | 114 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g++++eE+ l+v++++qlG++ W++ a+ + Neem_6157_f_2 85 KGAFSPEEERLIVELHAQLGNK-WARMAAQV 114 799*******************.***99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.5 | 27 | 83 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 29 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 32 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.63E-24 | 33 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.31E-11 | 34 | 79 | No hit | No description |
PROSITE profile | PS50090 | 6.249 | 80 | 114 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 83 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4 | 84 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-6 | 85 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MLLGNSSSEQ LESGSSGLNG EGGGDGGIQL KKGPWTAAED AILTEYVRKH GEGNWNAVQR 60 NTGLARCGKS CRLRWANHLR PNLKKGAFSP EEERLIVELH AQLGNKWARM AAQVSLIYII 120 LIFIPTAPLS PTPPPLSPNL QSPHHPSYPT LSLFDTNNNN SNNSNVSNPF NIPRTPPTLQ 180 NPPRFKRFHS DTSIPNIGTA TTANNVSNSN NGIGSSTFQS GSNFSLPFSP FLRSPSSSSL 240 LNAPQSNCNT SAYSNTASRL LSLPSFSTLP VSFNTPNSSS FFRTTDEKDC ILSNSSVFAL 300 KPELPSSQLL SQSGNAELNF DNEKLSVSCS GSGLLEDLLE EAQALACNFG ESSGRASEEK 360 REFSGFNQWN DSISINLSSG LKPKEEAGGQ MNSTHEDLSK LLNVIPSMEV PEWYNDSGEV 420 SNGQSSVVTD ENIGLEMQQI ASLFRVDSNT EHARPPGSCS LDNLPGIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-20 | 29 | 111 | 24 | 105 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475135.1 | 1e-114 | transcription factor MYB120 | ||||
Refseq | XP_024033427.1 | 1e-114 | transcription factor MYB120 | ||||
TrEMBL | A0A2I4DX23 | 1e-106 | A0A2I4DX23_JUGRE; transcription factor MYB86 | ||||
STRING | XP_006475135.1 | 1e-114 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 7e-48 | myb domain protein 101 |