PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_27410_a_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 71aa MW: 7842.03 Da PI: 8.2141 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +grWT+eEde+l ++++ G g+W++ ++ Neem_27410_a_1 14 KGRWTAEEDEILTKYIQANGEGSWRSLPKN 43 79***********************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-12 | 6 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.16E-8 | 8 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.098 | 9 | 71 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.5E-7 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.15E-4 | 16 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MGRASCCEKV GLKKGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAALLHGD ALHATGCGSY 60 CCILLRRMEK D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028125325.1 | 1e-24 | transcription factor MYB111-like | ||||
Swissprot | Q9FJ07 | 3e-22 | MY111_ARATH; Transcription factor MYB111 | ||||
TrEMBL | A0A1J7IKX5 | 2e-22 | A0A1J7IKX5_LUPAN; Uncharacterized protein | ||||
STRING | XP_004494411.1 | 4e-23 | (Cicer arietinum) | ||||
STRING | XP_009622107.1 | 7e-23 | (Nicotiana tomentosiformis) | ||||
STRING | XP_010095299.1 | 8e-23 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-24 | myb domain protein 111 |