PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_26708_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34178.6 Da PI: 8.4074 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ v+ +G g+W++++++ g++R++k+c++rw +yl Neem_26708_f_2 14 RGLWTPEEDAKILAHVANHGIGNWTSVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T++E+e++++++k G++ W++Ia++++ gRt++++k++w++ Neem_26708_f_2 68 DNFTPQEEEIIINLHKAIGSR-WSLIAKRLP-GRTDNDVKNYWNT 110 68*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.405 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.8E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.027 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.77E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRPPCCNKS NVKRGLWTPE EDAKILAHVA NHGIGNWTSV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPQEEEIIIN LHKAIGSRWS LIAKRLPGRT DNDVKNYWNT KLKKKLSNMG 120 IDPVTHKPIS QLLSDYGNIS GNISINTAKH FGNKNLKNTL FSKPETLSVQ DHSSVTTCNP 180 VCDFMPHFFS TEIASSCSSS SSSAQISPPS PFSWTEFLVS DPIFSMDLQQ QIQPKLDVML 240 PQTNSNLTEN KIPSFDFIGA YNSRSHNGNQ VNADSPSAGS FVDDILSKDR EMCSHSFQLL 300 DGFLEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 5e-27 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431044.1 | 1e-116 | transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 7e-86 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | A0A067GAK3 | 1e-115 | A0A067GAK3_CITSI; Uncharacterized protein | ||||
STRING | XP_006431044.1 | 1e-115 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-85 | MYB family protein |
Publications ? help Back to Top | |||
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