PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_23919_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 161aa MW: 17802.2 Da PI: 8.8431

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_23919_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.6	1.6e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Neem_23919_f_1 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-33	48	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-18	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-26	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-10	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-9	135	156	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MYQPNSVPSS SLVRSNSLVH GQHLDCGSSQ MDPMNGGNNV NNNPSLASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKVDKK 120 ETGDMLSSLD GSSGMQITEA LKLQMEVQKR LHEQLEACFC P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-26	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-26	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-26	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-26	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00628	PBM	Transfer from PK10342.1	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449962.1	1e-110	myb family transcription factor PHL7 isoform X1
Refseq	XP_006467243.1	1e-110	myb family transcription factor PHL7 isoform X1
Refseq	XP_024951354.1	1e-110	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	6e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	V4UB20	1e-109	V4UB20_9ROSI; Uncharacterized protein
STRING	XP_006467243.1	1e-109	(Citrus sinensis)
STRING	XP_006449962.1	1e-109	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-53	G2-like family protein