PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | G2-like | ||||||||
Protein Properties | Length: 148aa MW: 16562.2 Da PI: 9.5011 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.9 | 1.3e-34 | 83 | 137 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl PK10342.1 83 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 137 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 80 | 140 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-18 | 82 | 138 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-33 | 82 | 138 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-26 | 83 | 138 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-10 | 85 | 136 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
XYIHNNHTHT YSFIITHEKT QASIVPNRRA GAWTETISVR FQICEAAPST DICVHGRHLD 60 SGVNTMDPVN GGNSLNNPSL ASKQRLRWTH ELHERFVDAV AQLGGPDRAT PKGVLRVMGV 120 QGLTIYHVKS HLQKYRLAKY LPESSSDX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-26 | 83 | 140 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-26 | 83 | 140 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-26 | 83 | 140 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-26 | 83 | 140 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00628 | PBM | 25215497 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096513.1 | 1e-58 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_021637722.1 | 4e-59 | myb family transcription factor PHL7-like | ||||
Refseq | XP_024021465.1 | 1e-58 | myb family transcription factor PHL7 isoform X2 | ||||
Swissprot | Q9SJW0 | 4e-42 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | W9RQE9 | 3e-57 | W9RQE9_9ROSA; Myb family transcription factor APL | ||||
STRING | XP_010096513.1 | 6e-58 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8610 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-44 | G2-like family protein |