PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11693_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 102aa    MW: 11832.2 Da    PI: 6.5139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11693_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.2e-102252246
                     T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                     ++W++Ia++++ gRt++++k++w++
   Neem_11693_f_1  2 RRWSKIAKHLP-GRTDNEIKNFWRT 25
                     57*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.681131IPR017930Myb domain
CDDcd001675.44E-8125No hitNo description
SuperFamilySSF466892.42E-8233IPR009057Homeodomain-like
PfamPF002495.1E-8325IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12335IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MRRWSKIAKH LPGRTDNEIK NFWRTRIQKH IKQAETLSGH SSEANEQASS SQMSTAAYTM  60
EAYSPPSYQA NMDHQTFPMA PLPTEVNENY WTMEDLWLLN GD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470308.14e-53myb-related protein 305 isoform X1
SwissprotP813915e-27MYB05_ANTMA; Myb-related protein 305
SwissprotP813965e-27MYB40_ANTMA; Myb-related protein 340
TrEMBLA0A067FJ193e-51A0A067FJ19_CITSI; Uncharacterized protein
TrEMBLA0A2H5P3243e-51A0A2H5P324_CITUN; Uncharacterized protein
STRINGXP_006470308.11e-52(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-23myb domain protein 57
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]