PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11482_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 516aa    MW: 56628.6 Da    PI: 7.8638
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11482_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.6e-174589147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++G g W+ I +++g ++t+ q++s+ qk+
   Neem_11482_f_1 45 REKWTEEEHQRFLEALRLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 89
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-163993IPR009057Homeodomain-like
PROSITE profilePS5129421.7224094IPR017930Myb domain
TIGRFAMsTIGR015571.0E-164392IPR006447Myb domain, plants
SMARTSM007171.1E-124492IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-94585IPR009057Homeodomain-like
PfamPF002491.2E-144588IPR001005SANT/Myb domain
CDDcd001671.17E-104790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSNSSVAAGK NGSQSESAVQ VKELYSFEND PLPKVRKPYT ITKQREKWTE EEHQRFLEAL  60
RLYGRGWRQI EEHVGTKTAV QIRSHAQKFF SKVVRESNGS AESSIMPIEI PPPRPKRKPM  120
HPYPRKHVES LKGTSVSNQQ ERLQSSNALV SDTDRQSPTS ILSAFALDTL GPAVSDQQNG  180
CSSPTSCTTE MHSANLLPIE KEIEYVTSNS SPEEEKVPTL SAQLSAGSNM DHMSVKTESQ  240
SKDSVCIKGD AAVVPTCSSI KLFGTTVLIT DSQKPYLPSA EICKSPKSNC SQENLDIDKK  300
NFVQSVPSKH LDTCLSIGMV ASPSSVGKLV FSHMELQKES ISIAETSPDS YLPFWSLYRG  360
VSFSNCRSCN HNSVPTPVEI LKEKETLNER SCTGSSTGSV SVLENREKST DAAVDSQCRQ  420
SSPLSRVSAG KGFVPYKRCL AESDINSSVA MSEERGRQRA LFQLRPSSLH HAEEDKGADN  480
GTKYAVLFFE WRVLELKRSA LGPGTGISLW PSAVVS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478113.10.0protein REVEILLE 7-like
TrEMBLA0A2H5PXN00.0A0A2H5PXN0_CITUN; Uncharacterized protein
TrEMBLA0A2H5PXP00.0A0A2H5PXP0_CITUN; Uncharacterized protein
STRINGXP_006478113.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.19e-40MYB_related family protein