PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10492_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 424aa    MW: 46899.9 Da    PI: 8.2839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10492_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+ eEd++l+++++++G g+W+++++  g+ R++k+c++rw +yl
   Neem_10492_f_6 14 KGLWSLEEDQKLLNYITKHGHGCWSSVSKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.93e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E+ l++++++ lG++ W+ Ia++++ gRt++++k++w+
   Neem_10492_f_6  67 RGAFSAQEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNFWN 109
                      89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-25664IPR009057Homeodomain-like
PROSITE profilePS5129416.649961IPR017930Myb domain
SuperFamilySSF466893.74E-2913108IPR009057Homeodomain-like
SMARTSM007174.9E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001671.20E-111761No hitNo description
PROSITE profilePS5129424.99462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565117IPR009057Homeodomain-like
SMARTSM007171.0E-1466114IPR001005SANT/Myb domain
PfamPF002492.7E-1467110IPR001005SANT/Myb domain
CDDcd001671.88E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGRHSCCYKQ KPRKGLWSLE EDQKLLNYIT KHGHGCWSSV SKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SAQEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNFWNS SIKKKLKQRG  120
IDPGTHKPLS EVEDCKEKQL TGTVNNEKAA AAASGDSRNL NLIETAQKPV SSSSNIRGQN  180
LTNAPQTQDF FPDKFATSNN ESSAISSRPD MEGHFPFQKL NYGPNVGLAF NKNTSVSFNQ  240
NSSSSEMISD SNSSMAQTII PPTSTSIFQT PTYVKTSISI PSDNPSAGST DISGIQNWES  300
RSFSNNGSSS NGSTPSIELQ SNSSFFECNF FPWGLADGGK SGEESQIQGN QEDIKWSEYF  360
NSTSFLLGSQ NPQAIISDVK PETHFILDGS SFNWHQNQHH QASQASAIYS KDLQKFSVAF  420
ERTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021652310.10.0transcription factor MYB61-like
TrEMBLA0A2H5Q3C50.0A0A2H5Q3C5_CITUN; Uncharacterized protein
STRINGXP_006480338.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-105myb domain protein 61