PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001751-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 607aa    MW: 66272.4 Da    PI: 5.2513
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001751-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.12.3e-1362395971374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++L++cAea+++++++la+al++++  la+++  +m+++a+yf+eALa+r+++    l+    p    ++n s+ l++   f+e++P+lkf+
  AHYPO_001751-RA 239 LVHTLMACAEALDQQNMALAEALVKQIGFLAASQTGSMRKVATYFAEALARRVYK----LC----PGVPYDDNLSDMLQM--HFYETCPYLKFA 322
                      689***************************************************9....22....223333457777666..5*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaIlea++g++rvH+iDf++++G+QWpaL+qaLa Rpegpp +R+Tg+g+p+++++++l+e+g++La+fA++++++fe++ +va++l+d
  AHYPO_001751-RA 323 HFTANQAILEAFSGKKRVHVIDFSMKEGMQWPALMQALALRPEGPPAFRLTGIGPPSPDNSDRLQEVGWKLAQFADSVQIQFEYRGFVANSLTD 416
                      ********************************************************************************************** PP

             GRAS 189 leleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      le + L+++p  Ea+aVn+v++lhrll++++++e+    vL l+k+++P +v+vveqeadhn++ F +rf e+l+yys+lfdsle+ +   +++
  AHYPO_001751-RA 417 LESSLLDLRPdSEAVAVNSVFELHRLLAKPGAIEK----VLGLIKEVKPVIVTVVEQEADHNGPVFIDRFNESLHYYSTLFDSLESCV---DSQ 503
                      **********99***********************....************************************************7...888 PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++++++++lgr+i+nvvaceg++r+erhetl++W+ r+++aGF+pv+++++a kqa++ll  ++ +dgy v e++g+l+lgW++rpL+++SaW+
  AHYPO_001751-RA 504 DKMMSEVYLGRQICNVVACEGTDRVERHETLSQWKTRFNSAGFNPVHIGSNAFKQASMLLDFFAgGDGYGVVENNGCLMLGWHSRPLITTSAWQ 597
                      89999999*************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.2E-3138111No hitNo description
PfamPF120413.8E-3238105IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.924213576IPR005202Transcription factor GRAS
PfamPF035148.1E-134239597IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MKREHPFSEN NLDPSTGKPP LGKSKMWEDG AQNDAGVDEL LAVLGYKVRS SDMAEVAQKL  60
EQLEQAMGNV RQDGLPQFGS DTVHYNPSDL SNWLESVISG FNPATSFDTS PSIGSIVDPI  120
RNPTQNSQVF TDPYSDYDLK AIPGKAILTP PKQSSSSSSS MLINGGNNNN NNNNNNNSNS  180
SNSLVSITTS SSCSSREAKR LKPSTYSNMD IAVSGSGSGS GSGSRQVLLV DSQENGIRLV  240
HTLMACAEAL DQQNMALAEA LVKQIGFLAA SQTGSMRKVA TYFAEALARR VYKLCPGVPY  300
DDNLSDMLQM HFYETCPYLK FAHFTANQAI LEAFSGKKRV HVIDFSMKEG MQWPALMQAL  360
ALRPEGPPAF RLTGIGPPSP DNSDRLQEVG WKLAQFADSV QIQFEYRGFV ANSLTDLESS  420
LLDLRPDSEA VAVNSVFELH RLLAKPGAIE KVLGLIKEVK PVIVTVVEQE ADHNGPVFID  480
RFNESLHYYS TLFDSLESCV DSQDKMMSEV YLGRQICNVV ACEGTDRVER HETLSQWKTR  540
FNSAGFNPVH IGSNAFKQAS MLLDFFAGGD GYGVVENNGC LMLGWHSRPL ITTSAWQLAK  600
NSVTRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6423459614378Protein SCARECROW
5b3h_A2e-6423459613377Protein SCARECROW
5b3h_D2e-6423459613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733118.10.0DELLA protein GAI-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A411HAW40.0A0A411HAW4_AMATR; Gibberellins insensitive protein
STRINGXP_010681882.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein