PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8671s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 360aa    MW: 40013.3 Da    PI: 7.2762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8671s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-175094147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +W++eE++++++a+k++G g W+ I +++g ++t+ q++s+ qk+
  Araha.8671s0003.1.p 50 REKWSEEEHDRFLEAIKLYGRG-WRHIQEHIG-TKTAVQIRSHAQKF 94
                         789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-154498IPR009057Homeodomain-like
PROSITE profilePS5129419.6854599IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-94696IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-154897IPR006447Myb domain, plants
SMARTSM007176.8E-134997IPR001005SANT/Myb domain
PfamPF002495.4E-155093IPR001005SANT/Myb domain
CDDcd001675.39E-115295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAAEDRSEEL SSNVENGSCN SNEGTNPETS SHWIENVVKV RKPYTVTKQR EKWSEEEHDR  60
FLEAIKLYGR GWRHIQEHIG TKTAVQIRSH AQKFFSKMAQ EPDYMSEGSV KAIVIPPPRP  120
KRKPAHPYPR KSPVPYSQSP SSNLSAMEKG AKSPTSVLSS LASEDQINRC SSPNSCTSDI  180
QSIGGTSIDK KNDYTTSKQS FKEDSDIGST PMSSITLFGK IFLVVEESHD KPFSYRDDDD  240
PKSMTDQENH YSGIKISSLH IDSRHVDTNL SLGVWETSCT GSNAFGSVTE VSENLEKSAE  300
PISSSWKQLT SVEKQGSCNP ATASGFRPYK RCLSEREVTS SFSLVASEEQ KSRRRPRIC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8671s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1156960.0AB115696.1 Arabidopsis thaliana EPR1 mRNA for MYB-related transcription factor EPR1, complete cds.
GenBankAY0639520.0AY063952.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds.
GenBankAY1140700.0AY114070.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867938.10.0protein REVEILLE 7 isoform X2
RefseqXP_020867940.10.0protein REVEILLE 7 isoform X2
SwissprotB3H5A80.0RVE7_ARATH; Protein REVEILLE 7
TrEMBLD7KGC90.0D7KGC9_ARALL; Early-phytochrome-responsive1
STRINGfgenesh2_kg.1__2004__AT1G18330.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.10.0MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]