PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7538s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 480aa    MW: 54516.8 Da    PI: 3.9951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7538s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.41.9e-16175264195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ffkv       + + lvlp +f  ++ ++k+ + t+t+++  g++W++ l  rk++++   +v+ +GWk+ vk+++Lk gDf+ F++dg+
  Araha.7538s0003.1.p 175 FFKVY--LPDESGDDLVLPISFN-SC-LPKPLPETVTVRSIYGKVWKMVL--RKCGSEvesFVMVNGWKRIVKDQDLKGGDFLEFEFDGS 258
                          67777..44555667*******7.67.5677999****************..666666668*************************9986 PP

                          SEE..EEE CS
                   B3  88 sefelvvk 95 
                          + f  ++ 
  Araha.7538s0003.1.p 259 RLF--NFC 264
                          666..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.362152IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-61150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-71150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-19172267IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-16173266No hitNo description
PROSITE profilePS5086312.337173269IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-17173267IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-14175265IPR003340B3 DNA binding domain
SMARTSM010193.9E-18175269IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-9375464IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-7375466IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MVLRKCGGEV ERFVMVDGWK KIVRDEDLNG GDLLAFEFDG SRCFSFCIYE HETMCKKLKR  60
SSEQSEEIIE VGSDGEEETQ ASDESDNDYA VEDDDVAEDD DGLEDEDEVE AEDDDDVKAE  120
DDDDERQYLD NHNNPYFTMT LNPKKKSQLL HDVSSVLIVT CFGTGNSGDF CLPKFFKVYL  180
PDESGDDLVL PISFNSCLPK PLPETVTVRS IYGKVWKMVL RKCGSEVESF VMVNGWKRIV  240
KDQDLKGGDF LEFEFDGSRL FNFCIYEHGT MCKRIRRSSE QSEETKMESD SDEENQASDD  300
VLSLDEVDDD SDYNCAEDND SDDYADEDDV EKDDNDGDDY VVDDVPVEDD DDVEAFDSHA  360
EADDDDDDER QYLDDRENPS FTLTLNPKKK SQLLIPGRVI KDYDLHFPES ITLVDPLVKK  420
FGTLEKKIKI QTNGSVFVKG FGSIIRRNKV KTTDKMMCEI KKTGDNNLVQ TIKIHIISG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1217427210104At1g16640
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7538s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0567300.0DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871470.11e-164B3 domain-containing protein At5g60130, partial
SwissprotQ9LVG11e-164Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A1P8BAC71e-162A0A1P8BAC7_ARATH; AP2/B3-like transcriptional factor family protein (Fragment)
STRINGBostr.7867s0314.1.p1e-156(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.24e-68B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]